Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9S8W

Human heparanase in complex with neutralizing antibody A54 Fab fragment

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-24
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.91589
Spacegroup nameP 41 21 2
Unit cell lengths69.738, 69.738, 429.781
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution107.440 - 3.490
Rwork0.220
R-free0.32300
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.813
Data reduction softwarexia2
Data scaling softwareSTARANISO
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]107.4403.870
High resolution limit [Å]3.4903.490
Rmeas0.2802.250
Number of reflections9227452
<I/σ(I)>9.21.7
Completeness [%]86.8
Redundancy15
CC(1/2)0.9990.950
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M Sodium Nitrate 20% PEG3350

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon