9LEW

The crystal structure of DinJ-YafQ complex from Vibrio cholerae

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PAL/PLS BEAMLINE 5C (4A)
Synchrotron site	PAL/PLS
Beamline	5C (4A)
Temperature [K]	100
Detector technology	PIXEL
Collection date	2024-12-20
Detector	DECTRIS EIGER X 9M
Wavelength(s)	1.000030
Spacegroup name	P 62 2 2
Unit cell lengths	163.924, 163.924, 114.035
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	36.410 - 2.300
R-factor	0.202
Rwork	0.201
R-free	0.23120
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.009
RMSD bond angle	1.097
Data reduction software	XDS
Data scaling software	XSCALE
Phasing software	PHASER
Refinement software	PHENIX ((1.20.1_4487: ???))

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	2.340
High resolution limit [Å]	2.300	6.240	2.300
Rmerge	0.085	0.044	0.400
Rmeas	0.089	0.046	0.422
Rpim	0.024	0.011	0.131
Total number of observations	451650
Number of reflections	40246	2180	1958
<I/σ(I)>	6.1
Completeness [%]	99.1	96.8	99
Redundancy	11.2	14.4	8.6
CC(1/2)	1.000	0.999	0.799

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293	0.1 M Sodium acetate trihydrate (pH 4.5), 2.0 M Ammonium sulfate