9L2N
Crystal structure of Cytochalasin D bound to a filamentous conformation actin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AichiSR BEAMLINE BL2S1 |
Synchrotron site | AichiSR |
Beamline | BL2S1 |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2017-06-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.12 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 57.213, 90.806, 114.554 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.210 - 1.700 |
R-factor | 0.1762 |
Rwork | 0.175 |
R-free | 0.20450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7w50 |
RMSD bond length | 0.011 |
RMSD bond angle | 0.960 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (1.21.2_5419) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.450 | 48.445 | 1.800 |
High resolution limit [Å] | 1.700 | 5.080 | 1.700 |
Rmerge | 0.126 | 0.042 | 0.902 |
Rmeas | 0.141 | 0.048 | 1.015 |
Number of reflections | 65908 | 2638 | 10466 |
<I/σ(I)> | 8.75 | 4.58 | 4.72 |
Completeness [%] | 99.5 | 97.5 | 98.9 |
Redundancy | 4.73 | 4.72 | |
CC(1/2) | 0.996 | 0.998 | 0.632 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 17% (w/v) PEG3350 and 20 mM Na2HPO4 |