9IS9
human MTHFD2 in complex with LY374571
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9 |
Spacegroup name | P 65 |
Unit cell lengths | 115.605, 115.605, 113.326 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.900 - 2.120 |
R-factor | 0.2101 |
Rwork | 0.208 |
R-free | 0.24140 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.931 |
Data reduction software | HKL-2000 (2.3.10) |
Data scaling software | HKL-2000 (2.3.10) |
Phasing software | MOLREP (11.0) |
Refinement software | PHENIX (1.21.1_5286_000) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.200 |
High resolution limit [Å] | 2.120 | 4.560 | 2.120 |
Rmerge | 0.061 | 0.030 | 0.509 |
Rmeas | 0.034 | 0.582 | |
Rpim | 0.016 | 0.277 | |
Number of reflections | 48738 | 4844 | 4856 |
<I/σ(I)> | 11.9 | ||
Completeness [%] | 99.7 | 97.1 | 100 |
Redundancy | 4.3 | 4 | 4.4 |
CC(1/2) | 0.998 | 0.874 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | isopropanol, Bis-Tris pH 7.1, PEG 400, PEG 1000 |