9HJZ

Crystal structure of human geranylgeranyl diphosphate synthase mutant Y246D

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ESRF BEAMLINE MASSIF-3
Synchrotron site	ESRF
Beamline	MASSIF-3
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-11-19
Detector	DECTRIS EIGER X 4M
Wavelength(s)	0.96770
Spacegroup name	P 6 2 2
Unit cell lengths	192.731, 192.731, 97.635
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	46.850 - 2.540
R-factor	0.2239
Rwork	0.222
R-free	0.25310
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.005
RMSD bond angle	0.620
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHENIX
Refinement software	PHENIX ((1.21.1_5286: ???))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	46.855	2.700
High resolution limit [Å]	2.540	2.540
Number of reflections	35207	5555
<I/σ(I)>	14.55
Completeness [%]	98.8
Redundancy	12.4
CC(1/2)	0.998	0.522

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		292	1.6M Sodium citrate tribasic dihydrate pH 6.5, 0.1M Trimethylamine hydrochloride