9G6Y

Crystal structure of NUDT5 bound to dNUDT5

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I03
Synchrotron site	Diamond
Beamline	I03
Temperature [K]	100
Detector technology	PIXEL
Collection date	2022-10-17
Detector	DECTRIS EIGER2 XE 16M
Wavelength(s)	0.9763
Spacegroup name	C 1 2 1
Unit cell lengths	113.571, 40.209, 99.960
Unit cell angles	90.00, 121.92, 90.00

Refinement procedure

Resolution	42.420 - 1.900
R-factor	0.214
Rwork	0.212
R-free	0.24220
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.003
RMSD bond angle	0.542
Data scaling software	xia2
Refinement software	PHENIX (1.19.2_4158)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	42.430	1.930
High resolution limit [Å]	1.900	1.900
Number of reflections	30533	1518
<I/σ(I)>	0.504
Completeness [%]	99.9
Redundancy	6.8
CC(1/2)	0.997	0.275

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION		298.15	0.2 M sodium acetate, 0.1 M Tris pH 8.5, and 30% PEG4000