9FQL
Crystal structure of hDM2 in complex with a peptidic ligand containing a di-urea insert.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.978570 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.986, 85.076, 198.423 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.651 - 2.000 |
R-factor | 0.222 |
Rwork | 0.221 |
R-free | 0.24790 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.850 | 42.850 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.098 | 0.060 | 0.729 |
Rmeas | 0.102 | 0.064 | 0.757 |
Rpim | 0.029 | 0.021 | 0.204 |
Total number of observations | 619745 | 6432 | 47676 |
Number of reflections | 49185 | 662 | 3530 |
<I/σ(I)> | 14.6 | 29.1 | 3.3 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 12.6 | 9.7 | 13.5 |
CC(1/2) | 0.997 | 0.998 | 0.940 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8.5 | 298 | 1 M Na2HPO4/K2HPO4 pH 6.9, 30% Glycerol |