Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9DOC

The von Willebrand factor A domain of human capillary morphogenesis gene II, flexibly fused to the 1TEL crystallization chaperone, Thr-Val linker variant, at 1.2 Angstrom resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]100
Detector technologyPIXEL
Collection date2023-11-11
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameP 65
Unit cell lengths101.428, 101.428, 49.239
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.920 - 1.190
R-factor0.1894
Rwork0.189
R-free0.19680
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle0.929
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.9201.233
High resolution limit [Å]1.1901.190
Rmerge0.0472.286
Rmeas0.0502.463
Rpim0.0160.895
Number of reflections913587752
<I/σ(I)>15.170.62
Completeness [%]97.2
Redundancy9
CC(1/2)1.0000.523
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.25298100 mM Bis-Tris, pH 7.25, 1350 mM Sodium Potassium Phosphate

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon