9D1I
Structure of Ubiquitin bound to KLHDC3-EloB/C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-04-27 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 114.709, 121.440, 153.142 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.290 - 2.000 |
R-factor | 0.1677 |
Rwork | 0.167 |
R-free | 0.18890 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.899 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.21_5207) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 4.310 | 2.000 |
Rmerge | 0.101 | 0.071 | 0.553 |
Rmeas | 0.107 | 0.075 | 0.590 |
Rpim | 0.035 | 0.025 | 0.202 |
Total number of observations | 632350 | ||
Number of reflections | 72013 | 7508 | 7041 |
<I/σ(I)> | 4.5 | ||
Completeness [%] | 99.8 | 99.9 | 98.3 |
Redundancy | 8.8 | 8.9 | 7.5 |
CC(1/2) | 0.984 | 0.987 | 0.903 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 10%PEG5KMME, 0.1M HEPES pH=7.0, 5% Tascsimate pH=7.0 |