9CKF
Crystal structure of SMYD2 secondary binding site mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-26 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 215.188, 52.909, 151.903 |
Unit cell angles | 90.00, 134.75, 90.00 |
Refinement procedure
Resolution | 53.940 - 2.500 |
R-factor | 0.2229 |
Rwork | 0.222 |
R-free | 0.24850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.671 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 107.900 | 2.581 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.150 | 1.225 |
Number of reflections | 27973 | 1400 |
<I/σ(I)> | 7.3 | 1.4 |
Completeness [%] | 94.0 | |
Redundancy | 2.8 | |
CC(1/2) | 0.980 | 0.229 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 20% PEG 3350, 100 mM Tris-HCl 7.5, 5% ethanol, 1 mM PARP1 peptide, 0.6 mM AdoHcy |