9BBE
Co-crystal structure of human DDB1 bound to fragment UB028668
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-25 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97911 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.319, 126.163, 170.313 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.180 - 2.000 |
R-factor | 0.20935 |
Rwork | 0.208 |
R-free | 0.23945 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 1.264 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.180 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.123 | 0.780 |
Rmeas | 0.133 | 0.840 |
Rpim | 0.049 | 0.306 |
Total number of observations | 33183 | |
Number of reflections | 92662 | 4542 |
<I/σ(I)> | 7 | 1.4 |
Completeness [%] | 99.7 | |
Redundancy | 7 | 7.3 |
CC(1/2) | 0.993 | 0.746 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 20% (v/w) PEG 3350, 0.2 M di-NH4tart |