8ZRS
Crystal structure of Skd3, AAA+ only
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-05-15 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 140.857, 172.407, 140.866 |
Unit cell angles | 90.00, 120.00, 90.00 |
Refinement procedure
Resolution | 14.904 - 3.390 |
R-factor | 0.2307 |
Rwork | 0.229 |
R-free | 0.28370 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.420 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.460 |
High resolution limit [Å] | 3.390 | 9.210 | 3.400 |
Rmerge | 0.112 | 0.045 | 0.614 |
Rmeas | 0.122 | 0.048 | 0.669 |
Rpim | 0.046 | 0.018 | 0.261 |
Number of reflections | 79613 | 4096 | 3862 |
<I/σ(I)> | 5.2 | ||
Completeness [%] | 98.9 | 98.6 | 96.2 |
Redundancy | 6.8 | 7.2 | 6.1 |
CC(1/2) | 1.000 | 0.998 | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 8% PEG 3350, 100 mM HEPES pH 7.5, 100 mM ammonium sulfate |