8ZG8
ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase PRT1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.28 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 78.030, 78.030, 70.452 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.770 - 1.744 |
R-factor | 0.2392 |
Rwork | 0.235 |
R-free | 0.27860 |
Structure solution method | SAD |
RMSD bond length | 0.020 |
RMSD bond angle | 1.731 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18rc7_3834) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.770 | 1.806 |
High resolution limit [Å] | 1.744 | 1.744 |
Rmerge | 0.084 | 2.158 |
Rmeas | 0.086 | 2.212 |
Rpim | 0.018 | 0.477 |
Number of reflections | 13080 | 1197 |
<I/σ(I)> | 32.13 | 1.37 |
Completeness [%] | 97.2 | 90.92 |
Redundancy | 21.4 | 20.5 |
CC(1/2) | 1.000 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 4 M sodium formate |