8Z9F
Crystal structure of glyoxylate reductase from Acetobacter aceti in complex with NADH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-04 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.598, 192.500, 118.213 |
Unit cell angles | 90.00, 95.07, 90.00 |
Refinement procedure
Resolution | 48.280 - 1.600 |
R-factor | 0.2124 |
Rwork | 0.211 |
R-free | 0.23170 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.958 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.280 | 1.657 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.122 | 1.181 |
Rpim | 0.049 | 0.540 |
Number of reflections | 321671 | 26268 |
<I/σ(I)> | 17.35 | 1.62 |
Completeness [%] | 95.6 | 78.46 |
Redundancy | 6.9 | 5.6 |
CC(1/2) | 0.999 | 0.588 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 0.4M MES, 0.2M CaCl2, 15% PEG 6000 |