8Z2B
Crystal structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the partially closed conformation (form II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-08-17 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 32 |
Unit cell lengths | 101.690, 101.690, 271.680 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.890 - 2.850 |
Rwork | 0.192 |
R-free | 0.26770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xvi |
RMSD bond length | 0.007 |
RMSD bond angle | 1.654 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | BALBES |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.950 |
High resolution limit [Å] | 2.850 | 2.850 |
Number of reflections | 73339 | 7224 |
<I/σ(I)> | 9.3 | |
Completeness [%] | 99.9 | |
Redundancy | 5.65 | |
CC(1/2) | 0.980 | 0.610 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.2 M MgCl2, 0.1 M Tris pH 7, and 10% PEG 8000 |