8YWP
Crystal structure of the Fab fragment of anti-IL-6 antibody I9H
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | BRUKER IMUS MICROFOCUS |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-13 |
Detector | APEX II CCD |
Wavelength(s) | 1.542 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 126.360, 126.360, 143.360 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.790 - 2.500 |
R-factor | 0.2603 |
Rwork | 0.258 |
R-free | 0.28470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4yk4 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.587 |
Data reduction software | XDS (20190315) |
Data scaling software | XSCALE (20190315) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18_3855) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.800 | 2.560 |
High resolution limit [Å] | 2.500 | 2.500 |
Rpim | 0.060 | 1.766 |
Number of reflections | 23296 | 1423 |
<I/σ(I)> | 10.7 | 0.4 |
Completeness [%] | 97.1 | 84.7 |
Redundancy | 23.8 | 2.3 |
CC(1/2) | 0.990 | 0.131 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM Tris-HCl, 20% PEG 20000 |