8YVW
Crystal structure of D12N mutant of L-azetidine-2-carboxylate hydrolase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-03-08 |
Detector | RIGAKU JUPITER 210 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.176, 71.361, 72.349 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.380 - 1.190 |
R-factor | 0.1199 |
Rwork | 0.119 |
R-free | 0.14500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3smv |
RMSD bond length | 0.009 |
RMSD bond angle | 1.133 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.520 | 1.260 |
High resolution limit [Å] | 1.190 | 1.190 |
Rmeas | 0.037 | 0.334 |
Number of reflections | 76136 | 10019 |
<I/σ(I)> | 37.06 | 5.26 |
Completeness [%] | 95.4 | 78.7 |
Redundancy | 9 | 6.3 |
CC(1/2) | 1.000 | 0.946 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 277 | 25% PEG 3350, 0.1M magnesium formate, 0.1 M imidazole/HCl buffer, pH8.0, 5 mM L-azetidine-2-carboxylate |