8YRU
Crystal structure of D-amino acid transaminase from Haliscomenobacter hydrossis (apo form) after 15 sec of soaking with phenylhydrazine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-16 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 87.490, 71.780, 52.241 |
Unit cell angles | 90.00, 100.72, 90.00 |
Refinement procedure
Resolution | 21.430 - 2.000 |
R-factor | 0.17928 |
Rwork | 0.177 |
R-free | 0.23214 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.799 |
Data reduction software | CrysalisPro |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 21.430 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.083 | 0.546 |
Rmeas | 0.092 | 0.615 |
Rpim | 0.038 | 0.276 |
Total number of observations | 119567 | 6358 |
Number of reflections | 21346 | 1390 |
<I/σ(I)> | 16.8 | 2.8 |
Completeness [%] | 99.0 | |
Redundancy | 5.6 | 4.6 |
CC(1/2) | 0.998 | 0.824 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 288 | 45% v/v Tacsimate pH 7.0, 0.1 M BIS-TRIS propane pH 7.0 |