8YNX
Crystal structure of Cag3-CagT complex from Helicobacter pylori
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-03-12 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.99984 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 112.621, 112.621, 128.204 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.130 - 3.250 |
R-factor | 0.1759 |
Rwork | 0.174 |
R-free | 0.20430 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.155 |
Data reduction software | HKL-2000 |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.130 | 3.370 |
High resolution limit [Å] | 3.250 | 3.250 |
Rmerge | 0.132 | 0.500 |
Number of reflections | 13523 | 1313 |
<I/σ(I)> | 9.6 | 2.4 |
Completeness [%] | 99.6 | 99.6 |
Redundancy | 4 | 3.6 |
CC(1/2) | 0.974 | 0.748 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Morpheus I A10 0.06M divalents mix, 0.1M buffer system 3, 30% v/v precipitant mix 2 |