8YMZ
Structure of ZBTB43 in complex with CACA containing B-form DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.979, 67.535, 99.466 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.020 - 2.950 |
R-factor | 0.2719 |
Rwork | 0.269 |
R-free | 0.29710 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.139 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
High resolution limit [Å] | 2.950 | 8.000 | 2.950 |
Rmerge | 0.101 | 0.066 | 1.088 |
Rmeas | 0.106 | 0.070 | 1.141 |
Rpim | 0.031 | 0.023 | 0.336 |
Total number of observations | 109139 | ||
Number of reflections | 8996 | 523 | 421 |
<I/σ(I)> | 4.8 | ||
Completeness [%] | 99.5 | 99.4 | 92.5 |
Redundancy | 12.1 | 10.3 | 10.4 |
CC(1/2) | 0.969 | 0.997 | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 0.2 M sodium chloride, 0.1 M Bis-Tris, pH 5.5, 25% w/v PEG 3350 |