8YLS
Structure of SARS-CoV-2 Mpro in complex with its degrader
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-06-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 97.120, 80.820, 54.690 |
Unit cell angles | 90.00, 116.50, 90.00 |
Refinement procedure
Resolution | 59.190 - 1.930 |
R-factor | 0.1809 |
Rwork | 0.179 |
R-free | 0.22220 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.042 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.190 | 1.990 |
High resolution limit [Å] | 1.930 | 1.930 |
Rmerge | 0.026 | 0.225 |
Number of reflections | 28213 | 4845 |
<I/σ(I)> | 19.04 | |
Completeness [%] | 99.0 | |
Redundancy | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.1 | 25 % w/v PEG 1500, 0.1 M SPG 9.0 |