8YKQ
Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with X77
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-07-22 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.979183 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.520, 55.000, 45.480 |
Unit cell angles | 90.00, 100.42, 90.00 |
Refinement procedure
Resolution | 55.820 - 2.000 |
R-factor | 0.189681002424 |
Rwork | 0.187 |
R-free | 0.23324 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.963 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.820 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.163 | 1.110 |
Number of reflections | 18632 | 1371 |
<I/σ(I)> | 9 | |
Completeness [%] | 99.3 | |
Redundancy | 6.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2M Na2SO4, 20%PEG3350 |