8YKM
Crystal structure of SARS-Cov-2 main protease G15S mutant in complex with X77
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-30 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.979183 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.810, 101.039, 104.448 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.620 - 1.840 |
R-factor | 0.209345398504 |
Rwork | 0.208 |
R-free | 0.23697 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.881 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.620 | 1.940 |
High resolution limit [Å] | 1.840 | 1.840 |
Rmerge | 0.076 | 0.863 |
Number of reflections | 60848 | 9063 |
<I/σ(I)> | 16.7 | |
Completeness [%] | 96.5 | |
Redundancy | 9.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20~24%PEG3350,0.12~0.21M sodium sulfate |