8YH4
Chito oligosaccharide deacetylase from vibrio campbellii (VhCOD) in complex with chitosanbiose (GlcN)2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 277 |
Detector technology | PIXEL |
Collection date | 2020-04-20 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.90003 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.894, 118.458, 252.574 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.887 - 2.128 |
R-factor | 0.1523 |
Rwork | 0.151 |
R-free | 0.18240 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.553 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.18.2-3874-000)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.170 |
High resolution limit [Å] | 2.128 | 5.780 | 2.130 |
Rmerge | 0.017 | 0.210 | |
Rmeas | 0.231 | 0.019 | 0.229 |
Rpim | 0.091 | 0.007 | 0.090 |
Number of reflections | 5768039 | 5476 | 5090 |
<I/σ(I)> | 16 | ||
Completeness [%] | 99.6 | 98.2 | 99.3 |
Redundancy | 7.2 | 6.8 | 6.3 |
CC(1/2) | 0.972 | 0.999 | 0.973 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 292 | 0.2M sodium fluoride, 0.1M Bis-Tris propane pH 8.5, 20% PEG 3350 |