8YA4
Crystal structure of a lysozyme form hen egg white
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17UM |
Synchrotron site | SSRF |
Beamline | BL17UM |
Temperature [K] | 300 |
Detector technology | PIXEL |
Collection date | 2023-12-17 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.924 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 78.819, 78.819, 37.699 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.410 - 2.100 |
R-factor | 0.1939 |
Rwork | 0.189 |
R-free | 0.23960 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.965 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.410 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.291 | 1.236 |
Rmeas | 0.297 | 1.262 |
Rpim | 0.059 | 0.252 |
Total number of observations | 183398 | 14482 |
Number of reflections | 7407 | 585 |
<I/σ(I)> | 20.2 | 6.6 |
Completeness [%] | 100.0 | |
Redundancy | 24.8 | 24.8 |
CC(1/2) | 0.998 | 0.929 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 300 | 0.1 M sodium acetate, 6% sodium chloride |