8Y97
Crystal structure of a heterooligomeric aminotransferase from Serratia sp. ATCC 39006, PMP-bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2021-11-27 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.465, 180.934, 183.306 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.630 - 2.830 |
R-factor | 0.22953 |
Rwork | 0.228 |
R-free | 0.25690 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.868 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.630 | 2.940 |
High resolution limit [Å] | 2.830 | 2.830 |
Rmerge | 0.131 | 0.950 |
Rmeas | 0.142 | 1.029 |
Rpim | 0.055 | 0.392 |
Total number of observations | 30199 | |
Number of reflections | 42789 | 4430 |
<I/σ(I)> | 14.2 | 2.3 |
Completeness [%] | 100.0 | |
Redundancy | 6.6 | 6.8 |
CC(1/2) | 0.997 | 0.786 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 10.5 | 293 | dipotassium hydrogenphosphate, sodium dihydrogenphosphate, lithium sulfate, CAPS |