8XYW
De novo designed protein Trx-3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-09-24 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 64.487, 64.511, 26.794 |
Unit cell angles | 90.00, 109.50, 90.00 |
Refinement procedure
Resolution | 32.260 - 1.410 |
R-factor | 0.2229 |
Rwork | 0.222 |
R-free | 0.24990 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.954 |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.240 | 1.480 |
High resolution limit [Å] | 1.410 | 1.410 |
Rmerge | 0.123 | 1.243 |
Rmeas | 0.134 | 1.499 |
Rpim | 0.052 | 0.810 |
Number of reflections | 19597 | 2550 |
<I/σ(I)> | 5.9 | |
Completeness [%] | 97.2 | |
Redundancy | 5.9 | |
CC(1/2) | 0.993 | 0.504 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 291 | 30% MPD , 100mM Sodium acetate pH 4.5 , 25% w/v Polyethylene glycol 1500 |