8XEP
Crystal structure of a Legionella pneumophila type IV effector in complex with ubiquitin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979183 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 200.951, 56.696, 100.238 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.190 - 2.950 |
R-factor | 0.2182 |
Rwork | 0.218 |
R-free | 0.22750 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.582 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19_4092: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.380 | 3.120 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmerge | 0.139 | 0.831 |
Rmeas | 0.153 | 0.910 |
Rpim | 0.062 | 0.368 |
Total number of observations | 146652 | 23533 |
Number of reflections | 25049 | 3946 |
<I/σ(I)> | 10.8 | 2.2 |
Completeness [%] | 99.8 | |
Redundancy | 5.9 | 6 |
CC(1/2) | 0.996 | 0.881 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 289 | 100 mM sodium acetate, pH 6.0, 160 mM ammonium sulfate, 21% PEG 4000, 20% glycerol |