8X37
Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-10-01 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 98.260, 50.270, 120.250 |
Unit cell angles | 90.00, 91.33, 90.00 |
Refinement procedure
Resolution | 49.165 - 1.980 |
Rwork | 0.221 |
R-free | 0.27440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7vpc |
RMSD bond length | 0.006 |
RMSD bond angle | 1.471 |
Data reduction software | DIALS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.080 |
High resolution limit [Å] | 1.980 | 1.980 |
Rmeas | 0.124 | 2.650 |
Number of reflections | 41220 | 6606 |
<I/σ(I)> | 8.52 | 1.05 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.6 | 6.8 |
CC(1/2) | 0.993 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | PEG3350, DL-Malic acid |