8WEO
Bacteroides fragilis toxin in complex with neutralization nanobody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 65 |
Unit cell lengths | 121.678, 121.678, 84.143 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.420 - 1.500 |
R-factor | 0.1717 |
Rwork | 0.171 |
R-free | 0.19670 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.906 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.19_4092: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.420 | 1.554 |
High resolution limit [Å] | 1.500 | 1.500 |
Number of reflections | 222554 | 11227 |
<I/σ(I)> | 21.14 | |
Completeness [%] | 100.0 | |
Redundancy | 12.7 | |
CC(1/2) | 1.000 | 0.512 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Ammonium sulfate, 0.1 M Sodium acetate trihydrate pH 4.6, 25% w/v Polyethylene glycol 4,000 |