8W7Q
Fe-O nanocluster of form-VI in the 4-fold channel of Ureaplasma diversum ferritin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-05-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.55 |
Spacegroup name | F 4 3 2 |
Unit cell lengths | 180.096, 180.096, 180.096 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.024 - 2.100 |
R-factor | 0.1704 |
Rwork | 0.166 |
R-free | 0.21470 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.798 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.230 | 0.090 | 1.842 |
Rmeas | 0.232 | 0.091 | 1.865 |
Rpim | 0.028 | 0.011 | 0.288 |
Number of reflections | 27565 | 886 | 743 |
<I/σ(I)> | 2.8 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 69.3 | 61.2 | 41.5 |
CC(1/2) | 0.992 | 0.998 | 0.768 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 297 | Bicine, MgCl2 |