8W1M
T.thermophilus DNAK nucleotide binding domain in complex with ADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-30 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 90.761, 179.939, 66.587 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.100 - 2.750 |
R-factor | 0.227 |
Rwork | 0.225 |
R-free | 0.25940 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.685 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.100 | 2.920 |
High resolution limit [Å] | 2.750 | 2.750 |
Number of reflections | 29004 | 4594 |
<I/σ(I)> | 8.3 | 1.7 |
Completeness [%] | 96.6 | 99.9 |
Redundancy | 3.7 | 3.6 |
CC(1/2) | 0.995 | 0.882 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 1:1 volume ratio of protein to reservoir Protein sample: 1.22 mM DnaK, 1.5 mM ADP Protein buffer: 20 mM HEPES pH 7.0, 75mM KCL, 5mM MgSO4 Well solution: 0.1 M NaCacodylate pH 6.5, 0.15 M CaAc, 42% PEG 600 |