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8VUM

Crystal structure of GH9 (K101P, K103N, V108I) HIV-1 reverse transcriptase in complex with non-nucleoside inhibitor 5e2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE 7B2
Synchrotron siteCHESS
Beamline7B2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-04
DetectorDECTRIS EIGER2 S 16M
Wavelength(s)0.987
Spacegroup nameC 1 2 1
Unit cell lengths162.220, 72.784, 108.799
Unit cell angles90.00, 99.73, 90.00
Refinement procedure
Resolution48.480 - 2.150
R-factor0.2343
Rwork0.233
R-free0.26450
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.409
Data reduction softwareHKL-2000 (721.4)
Data scaling softwareHKL-2000 (721.4)
Phasing softwarePHENIX (1.19.2_4158)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.4802.230
High resolution limit [Å]2.1502.150
Rmeas0.0570.650
Rpim0.0230.388
Number of reflections660505262
<I/σ(I)>25.891.6
Completeness [%]96.877.44
Redundancy52
CC(1/2)0.9980.290
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP27710% (v/v) poly(ethylene glycol) (PEG) 8000, 4% (v/v) PEG 400, 100 mM MES pH 6.3, 10 mM spermine, 15 mM MgSO4, 100 mM ammonium sulfate, and 5 mM tris(2-carboxyethyl)phosphine

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PDB entries from 2026-04-08

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