Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VQK

YcjN from Escherichia coli

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-1
Synchrotron siteSSRL
BeamlineBL12-1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-11-08
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97946
Spacegroup nameP 1
Unit cell lengths63.216, 63.290, 74.314
Unit cell angles110.01, 91.09, 118.66
Refinement procedure
Resolution35.650 - 1.950
R-factor0.2177
Rwork0.215
R-free0.26400
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.805
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.4002.060
High resolution limit [Å]1.9501.950
Rpim0.088
Number of reflections617616203
<I/σ(I)>3.9
Completeness [%]91.4
Redundancy3.9
CC(1/2)0.293
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2950.01 M CdCl2, 0.2 M NH4SO4, 0.1 M HEPES pH 7.5, and 25 % PSM

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon