8VOM
Double alanine Apex domain mutant of bacteriophage P2 central spike protein, membrane-piercing module
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-12-05 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 73.010, 52.810, 78.370 |
Unit cell angles | 90.00, 108.68, 90.00 |
Refinement procedure
Resolution | 44.060 - 1.250 |
R-factor | 0.1194 |
Rwork | 0.119 |
R-free | 0.13910 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.010 |
Data reduction software | XDS (1.20.1_4487) |
Data scaling software | XSCALE (1.20.1_4487) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.280 |
High resolution limit [Å] | 1.250 | 1.250 |
Rmeas | 0.064 | 0.483 |
Number of reflections | 306387 | 22084 |
<I/σ(I)> | 18.03 | 5.24 |
Completeness [%] | 99.7 | 97.2 |
Redundancy | 7.42 | 7.16 |
CC(1/2) | 0.997 | 0.959 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 26-33% Pentaerythritol ethoxylate (15/4 EO/OH) aka PEE-797, 100 mM Bis-Tris or MES pH 6.0-6.5 |