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8VNT

Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 1800s

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2022-06-26
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.1271
Spacegroup nameP 31 2 1
Unit cell lengths114.129, 114.129, 88.740
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution33.020 - 1.620
R-factor0.1779
Rwork0.177
R-free0.19760
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.060
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]33.02033.0201.710
High resolution limit [Å]1.6204.8301.620
Rmerge0.0960.0421.005
Rmeas0.1010.0441.057
Number of reflections165081621326218
<I/σ(I)>16.69
Completeness [%]99.6
Redundancy20.2
CC(1/2)0.9990.9990.825
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62980.2 M Sodium Malonate, PEG 3350, 0.1 M MES

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