Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VNC

Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 320s

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2023-04-05
DetectorMAR scanner 300 mm plate
Wavelength(s)0.9787
Spacegroup nameP 31 2 1
Unit cell lengths113.650, 113.650, 88.310
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.790 - 1.620
R-factor0.1801
Rwork0.180
R-free0.18830
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.159
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.79047.7901.720
High resolution limit [Å]1.6204.8501.620
Rmerge0.0810.0380.811
Rmeas0.0890.0420.896
Number of reflections162716613925870
<I/σ(I)>11.74
Completeness [%]99.7
Redundancy11
CC(1/2)0.9980.9980.743
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62980.2 M Sodium Malonate, PEG 3350, 0.1 M MES

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon