Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VN8

Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 40s

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2023-04-05
DetectorMAR scanner 300 mm plate
Wavelength(s)0.9787
Spacegroup nameP 31 2 1
Unit cell lengths113.650, 113.650, 88.310
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.790 - 1.600
R-factor0.179
Rwork0.178
R-free0.19400
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.155
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.7901.700
High resolution limit [Å]1.6001.600
Rmerge0.0770.859
Number of reflections167997
<I/σ(I)>12.53
Completeness [%]99.7
Redundancy11
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62980.2 M Sodium Malonate, PEG 3350, 0.1 M MES

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon