Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VN3

Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 600s

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-31
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.9765
Spacegroup nameP 31 2 1
Unit cell lengths113.880, 113.880, 88.220
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.840 - 1.630
R-factor0.1801
Rwork0.179
R-free0.19330
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.156
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.84047.8401.720
High resolution limit [Å]1.6304.8601.630
Rmerge0.0750.0290.700
Rmeas0.0830.0320.781
Number of reflections160541605425785
<I/σ(I)>14.05
Completeness [%]99.9
Redundancy10
CC(1/2)0.9990.9990.763
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62980.2 M Sodium Malonate, PEG 3350, 0.1 M MES

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon