Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VMX

Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 10s

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-31
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.9765
Spacegroup nameP 31 2 1
Unit cell lengths113.880, 113.880, 88.220
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.310 - 1.450
R-factor0.1803
Rwork0.180
R-free0.18390
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.101
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.31049.3101.540
High resolution limit [Å]1.4504.3301.450
Rmerge0.0630.0350.668
Rmeas0.0700.0390.750
Number of reflections226986854436339
<I/σ(I)>14.57
Completeness [%]99.8
Redundancy9.9
CC(1/2)0.9990.9980.760
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62980.2 M Sodium Malonate, PEG 3350, 0.1 M MES

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon