Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VMA

The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2022-09-25
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.98
Spacegroup nameP 1 21 1
Unit cell lengths52.993, 106.369, 142.819
Unit cell angles90.00, 99.23, 90.00
Refinement procedure
Resolution70.480 - 2.540
R-factor0.2067
Rwork0.205
R-free0.24450
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.246
Data reduction softwareRAPD
Data scaling softwareRAPD
Phasing softwarePHENIX (1.20.1_4487)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]140.9702.620
High resolution limit [Å]2.5402.540
Number of reflections514564415
<I/σ(I)>12.3
Completeness [%]99.5
Redundancy3.5
CC(1/2)0.9990.425
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2980.2 M sodium formate, 20% w/v polyethylene glycol 3350, pH 7.2, 3.0% w/v 1,5-diaminopentane dihydrochloride linker.

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon