8VGD
Complex of ExbD with D-box peptide: Tetragonal form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-14 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.92011 |
Spacegroup name | P 41 |
Unit cell lengths | 49.010, 49.010, 62.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.630 - 1.420 |
Rwork | 0.187 |
R-free | 0.20400 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 26.400 | 26.400 | 1.460 |
High resolution limit [Å] | 1.420 | 6.350 | 1.420 |
Rmerge | 0.080 | 0.073 | 5.067 |
Rmeas | 0.083 | 0.076 | 5.253 |
Number of reflections | 27989 | 332 | 2029 |
<I/σ(I)> | 13.6 | ||
Completeness [%] | 100.0 | ||
Redundancy | 14.4 | ||
CC(1/2) | 0.998 | 0.997 | 0.270 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.8 | 277 | 2M ammonium sulfate in 0.1 M sodium citrate, pH 5.8; microbatch under Al's oil |