Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8VGD

Complex of ExbD with D-box peptide: Tetragonal form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-14
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.92011
Spacegroup nameP 41
Unit cell lengths49.010, 49.010, 62.640
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.630 - 1.420
Rwork0.187
R-free0.20400
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]26.40026.4001.460
High resolution limit [Å]1.4206.3501.420
Rmerge0.0800.0735.067
Rmeas0.0830.0765.253
Number of reflections279893322029
<I/σ(I)>13.6
Completeness [%]100.0
Redundancy14.4
CC(1/2)0.9980.9970.270
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH5.82772M ammonium sulfate in 0.1 M sodium citrate, pH 5.8; microbatch under Al's oil

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon