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8VFH

Ternary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a dC

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2020-02-06
DetectorDECTRIS PILATUS3 R 200K-A
Wavelength(s)1.54
Spacegroup nameP 1 21 1
Unit cell lengths50.800, 80.400, 55.500
Unit cell angles90.00, 107.90, 90.00
Refinement procedure
Resolution24.650 - 2.010
R-factor0.1836
Rwork0.177
R-free0.24560
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.041
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.050
High resolution limit [Å]2.0102.010
Number of reflections246311355
<I/σ(I)>11.2
Completeness [%]99.6
Redundancy4.1
CC(1/2)0.9900.401
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29114-22% PEG 3350 0.05 M Imidazole pH 8.0 0.35 M Sodium Acetate

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PDB entries from 2024-05-29

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