8VFE
Binary DNA Polymerase Beta bound to DNA containing primer terminal FapydG base-paired with a T
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-04 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.680, 79.287, 54.958 |
Unit cell angles | 90.00, 106.15, 90.00 |
Refinement procedure
Resolution | 24.890 - 2.090 |
R-factor | 0.2029 |
Rwork | 0.200 |
R-free | 0.23490 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.258 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.140 |
High resolution limit [Å] | 2.090 | 2.090 |
Number of reflections | 36973 | 1306 |
<I/σ(I)> | 16.8 | |
Completeness [%] | 99.9 | |
Redundancy | 4.3 | |
CC(1/2) | 0.999 | 0.634 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 14-22% PEG 3350 0.05 M Imidazole pH 8.0 0.35 M Sodium Acetate |