8VEI
De novo designed colic acid binder CHD_r1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-09 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97911 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 46.242, 57.819, 85.120 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.560 - 2.030 |
R-factor | 0.231 |
Rwork | 0.227 |
R-free | 0.26380 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.432 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.240 | 2.180 |
High resolution limit [Å] | 2.030 | 2.030 |
Rmerge | 0.247 | 1.420 |
Rpim | 0.069 | |
Number of reflections | 7672 | 1480 |
<I/σ(I)> | 9.7 | 1.8 |
Completeness [%] | 99.8 | 99.6 |
Redundancy | 12.8 | 12.8 |
CC(1/2) | 0.998 | 0.831 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.1 M Tris/Biocine pH 8.5, 25% v/v 2-methyl-2,4-pentanediol (MPD); 25% PEG1000; 25% w/v PEG 3350 and 0.093 MSodium fluoride; 0.3 M Sodium bromide; 0.3 M Sodium iodide |