8VC5
Crystal structure of glutamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa (Zinc bound)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-10-24 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.814, 134.833, 181.625 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.330 - 2.300 |
R-factor | 0.2104 |
Rwork | 0.208 |
R-free | 0.25550 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.473 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.21rc1_5177) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.810 | 2.370 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.093 | 1.341 |
Rmeas | 0.099 | 1.414 |
Rpim | 0.031 | 0.444 |
Total number of observations | 528827 | 43283 |
Number of reflections | 52286 | 4476 |
<I/σ(I)> | 14.3 | 1.8 |
Completeness [%] | 100.0 | |
Redundancy | 10.1 | 9.7 |
CC(1/2) | 0.999 | 0.795 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | Berkeley D8: 20% (w/v) PEG 3350, 100 mM MES / Sodium hydroxide pH 5.5, 100 mM Ammonium citrate dibasic, 5% (v/v) 2-Propanol. PsaeA.01348.a.B1.PW37887 at 46 mg/mL. plate 13731 well D8 drop 3. Puck: PSL-1902, Cryo: 80% crystallant + 20% ethylene glycol. |