8V9O
Imaging scaffold engineered to bind the therapeutic protein target BARD1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979340 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 128.010, 195.570, 228.370 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.990 - 3.810 |
R-factor | 0.2002 |
Rwork | 0.197 |
R-free | 0.23050 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.607 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.990 | 19.990 | 3.910 |
High resolution limit [Å] | 3.810 | 17.020 | 3.810 |
Rmerge | 0.129 | 0.029 | 2.051 |
Rmeas | 0.139 | 0.032 | 2.237 |
Number of reflections | 28155 | 137 | 1980 |
<I/σ(I)> | 11.07 | ||
Completeness [%] | 98.9 | ||
Redundancy | 6.8 | ||
CC(1/2) | 0.999 | 0.999 | 0.486 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 293 | 0.14M Calcium chloride , 0.07M Sodium Acetate 4.6 , 14% v/v Isopropanol , 30% v/v glycerol |