8V2F
Crystal structure of IRAK4 kinase domain with compound 9
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 142.870, 140.680, 89.020 |
Unit cell angles | 90.00, 124.00, 90.00 |
Refinement procedure
Resolution | 49.140 - 2.090 |
R-factor | 0.17014 |
Rwork | 0.168 |
R-free | 0.20754 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.589 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.140 | 2.165 |
High resolution limit [Å] | 2.090 | 2.090 |
Rmerge | 0.139 | 1.170 |
Rmeas | 0.151 | 1.265 |
Rpim | 0.058 | 0.477 |
Number of reflections | 85963 | 8596 |
<I/σ(I)> | 13.07 | 2.35 |
Completeness [%] | 99.9 | 99.95 |
Redundancy | 6.8 | 7 |
CC(1/2) | 0.997 | 0.668 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 1.8M ammonium citrate, 1.75mM compound (1.8% DMSO) |