8UR9
Crystal Structure of the SARS-CoV-2 Main Protease in Complex with Compound 61
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979180 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.910, 99.895, 104.314 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.910 - 2.300 |
R-factor | 0.2051 |
Rwork | 0.203 |
R-free | 0.23630 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.885 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 56.910 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.155 | |
Rmeas | 0.162 | |
Rpim | 0.044 | 0.614 |
Number of reflections | 31931 | 3138 |
<I/σ(I)> | 13.7 | 1.25 |
Completeness [%] | 99.5 | 99.18 |
Redundancy | 13.2 | 12.8 |
CC(1/2) | 0.999 | 0.488 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 294 | 10% v/v 2-Propanol 0.1 M BICINE pH 8.5 30% w/v Polyethylene glycol 1500 |