8UO6
HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2023-04-01 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.782, 81.314, 81.372 |
Unit cell angles | 90.00, 99.14, 90.00 |
Refinement procedure
Resolution | 57.150 - 2.850 |
R-factor | 0.2326 |
Rwork | 0.231 |
R-free | 0.25780 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.756 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (1.20.1_4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.200 | 3.200 |
High resolution limit [Å] | 2.850 | 2.850 |
Rmeas | 0.100 | |
Rpim | 0.050 | 0.720 |
Number of reflections | 12674 | 635 |
<I/σ(I)> | 8.9 | 1 |
Completeness [%] | 88.5 | |
Redundancy | 4 | |
CC(1/2) | 0.999 | 0.487 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 100 mM SPG (mixture of succinic acid, sodium dihydrogen phosphate, and glycine in a 2:7:7 molar ratio), 20-24% polyethylene glycol-6000, and 200 mM sodium fluoride |